Assembly
ASM2531151v1
BioProject PRJNA880306 · BioSample SAMN30837134
GENOME-RESOLVED EVIDENCE
GCA_025311515.1
Limosilactobacillus vaginalis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1883554 bp · GC 40.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| adhEWP_260964867.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1076.700 / 0.99100 | Bridge orthogroup OG0002334 |
| hbdWP_260963940.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 320.700 / 0.98900 | Bridge orthogroup OG0000153 |
| thlWP_098044963.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 512.100 / 0.99500 | Bridge orthogroup OG0000010 |
| crtWP_003717942.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.100 / 0.98500 | Profile only |
| fabGWP_260964019.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 216.200 / 0.98800 | Profile only |
| fabGWP_003716686.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.500 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_003716905.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.000 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_003716907.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.100 / 0.99200 | Profile only |
| fabGWP_003716892.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 169.900 / 0.87900 | Bridge orthogroup OG0000242 |
| fabLWP_003716686.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.300 / 0.97600 | Profile only |
| fabLWP_260964019.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.800 / 0.98800 | Profile only |
| fabLWP_003716905.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.500 / 0.99200 | Profile only |
| fabLWP_003716907.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.800 / 0.99200 | Profile only |
| fabLWP_003716892.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 144.100 / 0.88900 | Profile only |
| ldhWP_003716968.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 384.100 / 0.98100 | Profile only |
| ldhWP_003716953.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 360.900 / 0.98100 | Profile only |
| ldhWP_260964339.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 325.000 / 0.97200 | Profile only |
| ldhWP_260964786.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 256.400 / 0.96800 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.