Assembly
ASM2564367v1
BioProject PRJNA562729 · BioSample SAMN12648941
GENOME-RESOLVED EVIDENCE
GCA_025643675.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3192184 bp · GC 28.500%
Completeness 31.050% · contamination 2.790%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| crt | crotonase/enoyl-CoA hydratase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| crtF1C14_09490 | UXZ09523.1 | OG0001394 | CP043681.1:2019453–2020226 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtF1C14_12265 | UXZ09635.1 | OG0001639 | CP043681.1:2581656–2582426 + | crotonase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.