Assembly
ASM2567770v1
BioProject PRJNA883424 · BioSample SAMN30965902
GENOME-RESOLVED EVIDENCE
GCA_025677705.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3044818 bp · GC 28.500%
Completeness 93.880% · contamination 1.380%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCOEG88_05785 | UYC94078.1 | OG0000061 | CP106926.1:1290218–1291570 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhOEG88_00590 | UYC93116.1 | OG0000131 | CP106926.1:130484–131437 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBOEG88_05775 | UYC94076.1 | OG0000212 | CP106926.1:1289293–1289784 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdOEG88_11850 | UYC92676.1 | OG0000229 | CP106926.1:2564740–2565588 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlOEG88_11275 | UYC92588.1 | OG0000234 | CP106926.1:2451519–2452697 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZOEG88_05780 | UYC94077.1 | OG0000785 | CP106926.1:1289787–1290206 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEOEG88_13155 | UYC92907.1 | OG0001124 | CP106926.1:2822209–2824806 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPOEG88_01575 | UYC93291.1 | OG0001228 | CP106926.1:355575–357098 + | L-lactate permease [Clostridium perfringens] |
| crtOEG88_11870 | UYC92680.1 | OG0001394 | CP106926.1:2568715–2569497 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.