Assembly
ASM2594678v1
BioProject PRJNA893385 · BioSample SAMN31421577
GENOME-RESOLVED EVIDENCE
GCA_025946785.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3541070 bp · GC 28.000%
Completeness 97.740% · contamination 6.840%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCOKA01_06910 | UYX11576.1 | OG0000061 | CP109957.1:1560447–1561799 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhOKA01_00670 | UYX10383.1 | OG0000131 | CP109957.1:151358–152311 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBOKA01_06900 | UYX11574.1 | OG0000212 | CP109957.1:1559522–1560013 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdOKA01_13570 | UYX09916.1 | OG0000229 | CP109957.1:2975442–2976290 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlOKA01_12635 | UYX09759.1 | OG0000234 | CP109957.1:2803846–2805024 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZOKA01_06905 | UYX11575.1 | OG0000785 | CP109957.1:1560016–1560435 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEOKA01_14860 | UYX10145.1 | OG0001124 | CP109957.1:3232552–3235149 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPOKA01_01740 | UYX10580.1 | OG0001228 | CP109957.1:399593–401116 + | L-lactate permease [Clostridium perfringens] |
| rnfAOKA01_06860 | UYX11566.1 | OG0001328 | CP109957.1:1552881–1553456 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtOKA01_13590 | UYX09920.1 | OG0001394 | CP109957.1:2979417–2980199 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtOKA01_00630 | UYX10375.1 | OG0001639 | CP109957.1:140700–141476 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.