Assembly
ASM2596257v1
BioProject PRJNA886855 · BioSample SAMN31143512
GENOME-RESOLVED EVIDENCE
GCA_025962575.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6461889 bp · GC 30.000%
Completeness 92.880% · contamination 7.970%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCOD350_00830 | UYZ36234.1 | OG0000061 | CP107022.1:192497–193849 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhOD350_00515 | UYZ36171.1 | OG0000131 | CP107022.1:120198–121148 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhOD350_10005 | UYZ37981.1 | OG0000131 | CP107022.1:2165597–2166550 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhOD350_17265 | UYZ34000.1 | OG0000131 | CP107022.1:3746994–3747944 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhOD350_21790 | UYZ34866.1 | OG0000131 | CP107022.1:4862042–4862989 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBOD350_00820 | UYZ36232.1 | OG0000212 | CP107022.1:191535–192050 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium beijerinckii] |
| hbdOD350_24705 | UYZ35372.1 | OG0000229 | CP107022.1:5475995–5476843 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlOD350_14760 | UYZ33527.1 | OG0000234 | CP107022.1:3203537–3204715 - | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| thlOD350_25555 | UYZ35517.1 | OG0000234 | CP107022.1:5631992–5633173 + | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii] |
| fabZOD350_00825 | UYZ36233.1 | OG0000785 | CP107022.1:192054–192482 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium beijerinckii] |
| adhEOD350_24535 | UYZ35341.1 | OG0001124 | CP107022.1:5434690–5437272 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii] |
| lctPOD350_10705 | UYZ38110.1 | OG0001228 | CP107022.1:2323390–2324925 - | L-lactate permease [Clostridium beijerinckii] |
| crtOD350_24685 | UYZ35368.1 | OG0001394 | CP107022.1:5471971–5472756 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtOD350_19995 | UYZ34529.1 | OG0001639 | CP107022.1:4394693–4395469 - | enoyl-CoA hydratase-related protein [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.