Assembly
ASM2598977v1
BioProject PRJDB14226 · BioSample SAMD00523266
GENOME-RESOLVED EVIDENCE
GCA_025989775.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3328167 bp · GC 28.500%
Completeness 97.500% · contamination 3.110%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfB | Rnf complex subunit B | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJUM001_12840 | BDS17050.1 | OG0000061 | AP026870.1:1486290–1487642 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldh1JUM001_01050 | BDS15871.1 | OG0000131 | AP026870.1:151388–152341 - | L-lactate dehydrogenase 1 [Clostridium perfringens] |
| hbdJUM001_25130 | BDS18279.1 | OG0000229 | AP026870.1:2838579–2839427 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlAJUM001_24140 | BDS18180.1 | OG0000234 | AP026870.1:2720802–2721980 - | acetyl-CoA acetyltransferase [Clostridium perfringens] |
| glcAJUM001_03140 | BDS16080.1 | OG0001228 | AP026870.1:403786–405309 + | L-lactate permease [Clostridium perfringens] |
| crt_2JUM001_25170 | BDS18283.1 | OG0001394 | AP026870.1:2842554–2843336 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| rnfBJUM001_12750 | BDS17041.1 | OG0001429 | AP026870.1:1479316–1480137 + | electron transport complex protein RnfB [Clostridium perfringens] |
| crt_1JUM001_00970 | BDS15863.1 | OG0001639 | AP026870.1:140737–141513 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.