Assembly
ASM2607275v1
BioProject PRJDB12159 · BioSample SAMD00402162
GENOME-RESOLVED EVIDENCE
GCA_026072755.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3537258 bp · GC 28.500%
Completeness 96.570% · contamination 8.130%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfB | Rnf complex subunit B | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCP118TE_14200 | BDC01711.1 | OG0000061 | AP025227.1:1613215–1614567 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens E] |
| ldh1CP118TE_01100 | BDC00401.1 | OG0000131 | AP025227.1:153843–154796 - | L-lactate dehydrogenase 1 [Clostridium perfringens E] |
| hbdCP118TE_26400 | BDC02931.1 | OG0000229 | AP025227.1:2990458–2991306 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens E] |
| thlACP118TE_25410 | BDC02832.1 | OG0000234 | AP025227.1:2873961–2875139 - | acetyl-CoA acetyltransferase [Clostridium perfringens E] |
| crt_2CP118TE_26440 | BDC02935.1 | OG0001394 | AP025227.1:2994432–2995214 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens E] |
| rnfBCP118TE_14110 | BDC01702.1 | OG0001429 | AP025227.1:1606238–1607044 + | electron transport complex protein RnfB [Clostridium perfringens E] |
| crt_1CP118TE_00990 | BDC00390.1 | OG0001639 | AP025227.1:140109–140885 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens E] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.