Assembly
ASM2622461v1
BioProject PRJNA702829 · BioSample SAMN17980880
GENOME-RESOLVED EVIDENCE
GCA_026224615.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3798093 bp · GC 27.500%
Completeness 98.860% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 3 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJW813_05680 | UZP04499.1 | OG0000061 | CP070936.1:1197022–1198374 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhJW813_12375 | UZP02512.1 | OG0000131 | CP070936.1:2624923–2625873 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhJW813_17080 | UZP03381.1 | OG0000131 | CP070936.1:3694757–3695704 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBJW813_05670 | UZP04497.1 | OG0000212 | CP070936.1:1196084–1196578 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdJW813_01740 | UZP03771.1 | OG0000229 | CP070936.1:379960–380808 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlJW813_02310 | UZP03858.1 | OG0000234 | CP070936.1:484959–486140 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| lctPJW813_01665 | UZP03757.1 | OG0000453 | CP070936.1:361527–362654 + | L-lactate permease [Clostridium botulinum] |
| fabZJW813_05675 | UZP04498.1 | OG0000785 | CP070936.1:1196584–1197012 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| adhEJW813_10705 | UZP02191.1 | OG0001124 | CP070936.1:2273355–2275985 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPJW813_01680 | UZP03760.1 | OG0001228 | CP070936.1:365704–367242 + | L-lactate permease [Clostridium botulinum] |
| lctPJW813_06955 | UZP04741.1 | OG0001228 | CP070936.1:1461617–1463161 + | L-lactate permease [Clostridium botulinum] |
| crtJW813_01720 | UZP03767.1 | OG0001394 | CP070936.1:376024–376806 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtJW813_09990 | UZP02062.1 | OG0001639 | CP070936.1:2113136–2113912 - | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.