Assembly
ASM2622473v1
BioProject PRJNA702829 · BioSample SAMN17980966
GENOME-RESOLVED EVIDENCE
GCA_026224735.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3848800 bp · GC 27.500%
Completeness 98.860% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 3 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJYA71_05955 | UZP07911.1 | OG0000061 | CP070939.1:1237824–1239176 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhJYA71_12645 | UZP05871.1 | OG0000131 | CP070939.1:2665728–2666678 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhJYA71_17345 | UZP06738.1 | OG0000131 | CP070939.1:3735577–3736524 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBJYA71_05945 | UZP07909.1 | OG0000212 | CP070939.1:1236886–1237380 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdJYA71_01735 | UZP07127.1 | OG0000229 | CP070939.1:379959–380807 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlJYA71_02305 | UZP07214.1 | OG0000234 | CP070939.1:484958–486139 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| lctPJYA71_01660 | UZP07113.1 | OG0000453 | CP070939.1:361526–362653 + | L-lactate permease [Clostridium botulinum] |
| fabZJYA71_05950 | UZP07910.1 | OG0000785 | CP070939.1:1237386–1237814 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| adhEJYA71_10975 | UZP05551.1 | OG0001124 | CP070939.1:2314160–2316790 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPJYA71_01675 | UZP07116.1 | OG0001228 | CP070939.1:365703–367241 + | L-lactate permease [Clostridium botulinum] |
| lctPJYA71_07230 | UZP08153.1 | OG0001228 | CP070939.1:1502419–1503963 + | L-lactate permease [Clostridium botulinum] |
| crtJYA71_01715 | UZP07123.1 | OG0001394 | CP070939.1:376023–376805 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtJYA71_10260 | UZP05421.1 | OG0001639 | CP070939.1:2153941–2154717 - | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.