Assembly
ASM2622475v1
BioProject PRJNA702829 · BioSample SAMN17981063
GENOME-RESOLVED EVIDENCE
GCA_026224755.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3807884 bp · GC 27.500%
Completeness 98.860% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 3 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJYA74_05675 | UZP11238.1 | OG0000061 | CP070943.1:1197023–1198375 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhJYA74_12370 | UZP09252.1 | OG0000131 | CP070943.1:2624927–2625877 - | L-lactate dehydrogenase [Clostridium botulinum] |
| ldhJYA74_17070 | UZP10119.1 | OG0000131 | CP070943.1:3694776–3695723 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBJYA74_05665 | UZP11236.1 | OG0000212 | CP070943.1:1196085–1196579 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| hbdJYA74_01735 | UZP10509.1 | OG0000229 | CP070943.1:379959–380807 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlJYA74_02305 | UZP10596.1 | OG0000234 | CP070943.1:484958–486139 + | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| lctPJYA74_01660 | UZP10495.1 | OG0000453 | CP070943.1:361526–362653 + | L-lactate permease [Clostridium botulinum] |
| fabZJYA74_05670 | UZP11237.1 | OG0000785 | CP070943.1:1196585–1197013 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| adhEJYA74_10700 | UZP08931.1 | OG0001124 | CP070943.1:2273359–2275989 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPJYA74_01675 | UZP10498.1 | OG0001228 | CP070943.1:365703–367241 + | L-lactate permease [Clostridium botulinum] |
| lctPJYA74_06950 | UZP11480.1 | OG0001228 | CP070943.1:1461618–1463162 + | L-lactate permease [Clostridium botulinum] |
| crtJYA74_01715 | UZP10505.1 | OG0001394 | CP070943.1:376023–376805 + | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
| crtJYA74_09985 | UZP08802.1 | OG0001639 | CP070943.1:2113140–2113916 - | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.