Assembly
ASM2624061v1
BioProject PRJNA899662 · BioSample SAMN31665929
GENOME-RESOLVED EVIDENCE
GCA_026240615.1
Clostridium kluyveri · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4549968 bp · GC 31.500%
Completeness 87.390% · contamination 15.510%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCOP486_10660 | UZQ52579.1 | OG0000061 | CP110856.1:2258092–2259435 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium kluyveri] |
| accBOP486_08240 | UZQ52130.1 | OG0000212 | CP110856.1:1782159–1782377 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium kluyveri] |
| accBOP486_10670 | UZQ52581.1 | OG0000212 | CP110856.1:2259932–2260444 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium kluyveri] |
| hbdOP486_08570 | UZQ52669.1 | OG0000229 | CP110856.1:1852101–1852943 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium kluyveri] |
| thlOP486_12015 | UZQ48715.1 | OG0000234 | CP110856.1:2523075–2524250 + | acetyl-CoA C-acetyltransferase [Clostridium kluyveri] |
| thlOP486_12020 | UZQ48716.1 | OG0000234 | CP110856.1:2525109–2526284 + | acetyl-CoA C-acetyltransferase [Clostridium kluyveri] |
| thlOP486_12025 | UZQ48717.1 | OG0000234 | CP110856.1:2527019–2528200 + | acetyl-CoA C-acetyltransferase [Clostridium kluyveri] |
| fabZOP486_10665 | UZQ52580.1 | OG0000785 | CP110856.1:2259460–2259912 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium kluyveri] |
| adhEOP486_04030 | UZQ51354.1 | OG0001124 | CP110856.1:886315–888948 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium kluyveri] |
| crtOP486_08590 | UZQ52199.1 | OG0001394 | CP110856.1:1856283–1857062 - | short-chain-enoyl-CoA hydratase [Clostridium kluyveri] |
| crtOP486_19115 | UZQ50032.1 | OG0016066 | CP110856.1:3881526–3882299 - | enoyl-CoA hydratase-related protein [Clostridium kluyveri] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.