Assembly
ASM2627826v1
BioProject PRJNA896717 · BioSample SAMN31562817
GENOME-RESOLVED EVIDENCE
GCA_026278265.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4577156 bp · GC 28.500%
Completeness 98.140% · contamination 0.310%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCONV75_04615 | UZT07146.1 | OG0000061 | CP111077.1:973877–975223 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. LQ25] |
| accCONV75_05855 | UZT07381.1 | OG0000061 | CP111077.1:1261968–1263320 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. LQ25] |
| ldhONV75_05495 | UZT07310.1 | OG0000131 | CP111077.1:1182677–1183630 + | L-lactate dehydrogenase [Clostridium sp. LQ25] |
| ldhONV75_08185 | UZT07831.1 | OG0000131 | CP111077.1:1783116–1784069 + | L-lactate dehydrogenase [Clostridium sp. LQ25] |
| ldhONV75_14185 | UZT05730.1 | OG0000131 | CP111077.1:3069484–3070422 + | L-lactate dehydrogenase [Clostridium sp. LQ25] |
| ldhONV75_18490 | UZT08592.1 | OG0000131 | CP111078.1:248655–249599 + | L-lactate dehydrogenase [Clostridium sp. LQ25] |
| accBONV75_04610 | UZT07145.1 | OG0000212 | CP111077.1:973373–973834 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium sp. LQ25] |
| accBONV75_05845 | UZT07379.1 | OG0000212 | CP111077.1:1261021–1261527 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. LQ25] |
| hbdONV75_01850 | UZT06658.1 | OG0000229 | CP111077.1:386783–387631 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. LQ25] |
| thlONV75_02440 | UZT06745.1 | OG0000234 | CP111077.1:496922–498103 + | acetyl-CoA C-acetyltransferase [Clostridium sp. LQ25] |
| fabZONV75_05850 | UZT07380.1 | OG0000785 | CP111077.1:1261531–1261959 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. LQ25] |
| lctPONV75_07680 | UZT07733.1 | OG0001228 | CP111077.1:1668398–1669939 + | L-lactate permease [Clostridium sp. LQ25] |
| crtONV75_01830 | UZT06654.1 | OG0001394 | CP111077.1:382782–383567 + | short-chain-enoyl-CoA hydratase [Clostridium sp. LQ25] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.