Assembly
ASM2631429v1
BioProject PRJNA899669 · BioSample SAMN31666078
GENOME-RESOLVED EVIDENCE
GCA_026314295.1
Caproicibacterium sp. BJN0003 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2458513 bp · GC 43.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_266162109.1 · acetyl-CoA carboxylase carboxyl transferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 353.200 / 0.94500 | Bridge orthogroup OG0001120 |
| accBWP_266162104.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 140.700 / 0.98100 | Annotation: gene_symbol |
| accCWP_266162107.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 630.500 / 0.99100 | Annotation: gene_symbol |
| accDWP_266162108.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 379.100 / 0.93500 | Bridge orthogroup OG0000844 |
| crtWP_266163444.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 331.600 / 0.98500 | Bridge orthogroup OG0002531 |
| fabFWP_266162103.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 524.300 / 0.99000 | Annotation: gene_symbol |
| fabGWP_266162102.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 255.300 / 0.99600 | Bridge orthogroup OG0000008 |
| rnfAWP_180341027.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 252.500 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_266163135.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 256.800 / 0.93900 | Bridge orthogroup OG0001404 |
| rnfCWP_266163139.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 326.900 / 0.77600 | Bridge orthogroup OG0001114 |
| rnfDWP_266163138.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 379.400 / 0.94400 | Bridge orthogroup OG0001182 |
| rnfEWP_266163136.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 264.300 / 0.93300 | Bridge orthogroup OG0001153 |
| rnfGWP_266163137.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 147.500 / 0.91200 | Bridge orthogroup OG0001292 |
| thlWP_266161843.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 503.700 / 0.99500 | Bridge orthogroup OG0000010 |
| etfAWP_266163440.1 · acryloyl-CoA reductase electron transfer subunit beta | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 255.200 / 0.64000 | Profile only |
| accBWP_266163416.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 74.800 / 0.54900 | Bridge orthogroup OG0000034 |
| bcdWP_266163442.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 615.700 / 0.99500 | Profile only |
| bcdWP_266163189.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 579.000 / 0.99700 | Profile only |
| crtWP_266161841.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 287.000 / 0.99600 | Annotation: specific_product_name |
| etfBWP_266163441.1 · acryloyl-CoA reductase electron transfer subunit gamma | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 296.900 / 1.00000 | Profile only |
| fabGWP_266162597.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 229.300 / 0.96800 | Profile only |
| fabGWP_266162336.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.500 / 0.99200 | Profile only |
| fabGWP_266163521.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 201.100 / 0.98000 | Profile only |
| fabGWP_266162010.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.700 / 0.97600 | Profile only |
| fabGWP_266162327.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 109.400 / 0.82700 | Bridge orthogroup OG0000242 |
| fabHWP_266162099.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 228.600 / 0.98800 | Profile only |
| fabKWP_266162100.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 469.300 / 0.99700 | Profile only |
| fabLWP_266162102.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.100 / 0.98400 | Profile only |
| fabLWP_266162597.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.200 / 0.95600 | Profile only |
| fabLWP_266162336.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 189.200 / 0.98400 | Profile only |
| fabLWP_266163521.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.400 / 0.98000 | Profile only |
| fabLWP_266162010.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 149.300 / 0.97600 | Profile only |
| fabZWP_266162105.1 · 3-hydroxyacyl-ACP dehydratase FabZ family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 89.000 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_266163443.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 407.700 / 0.98900 | Profile only |
| hbdWP_266161844.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 271.300 / 0.98900 | Profile only |
| ldhWP_266163134.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 392.300 / 0.96500 | Profile only |
| ldhWP_266162890.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 330.800 / 0.97200 | Profile only |
| ldhWP_266161397.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 285.700 / 0.98700 | Profile only |
| thlWP_266163445.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 601.400 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.