Assembly
ASM2641006v1
BioProject PRJNA844305 · BioSample SAMN28812949
GENOME-RESOLVED EVIDENCE
GCA_026410065.1
Clostridium pasteurianum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4470321 bp · GC 30.000%
Completeness 95.470% · contamination 4.460%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 4 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCOSC52_20865 | UZW14224.1 | OG0000061 | CP112872.1:4383040–4384383 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium pasteurianum] |
| ldhOSC52_09260 | UZW15983.1 | OG0000131 | CP112872.1:1975902–1976846 - | L-lactate dehydrogenase [Clostridium pasteurianum] |
| ldhOSC52_14660 | UZW13082.1 | OG0000131 | CP112872.1:3079656–3080498 - | L-lactate dehydrogenase [Clostridium pasteurianum] |
| accBOSC52_20875 | UZW14226.1 | OG0000212 | CP112872.1:4385090–4385590 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium pasteurianum] |
| hbdOSC52_15505 | UZW13243.1 | OG0000229 | CP112872.1:3243495–3244343 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum] |
| thlOSC52_04650 | UZW15133.1 | OG0000234 | CP112872.1:1008342–1009520 + | acetyl-CoA C-acetyltransferase [Clostridium pasteurianum] |
| thlOSC52_19040 | UZW13895.1 | OG0000234 | CP112872.1:4009420–4010598 - | acetyl-CoA C-acetyltransferase [Clostridium pasteurianum] |
| fabZOSC52_20870 | UZW14225.1 | OG0000785 | CP112872.1:4384594–4385019 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium pasteurianum] |
| adhEOSC52_03160 | UZW14858.1 | OG0001124 | CP112872.1:668285–670891 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium pasteurianum] |
| adhEOSC52_08070 | UZW15764.1 | OG0001124 | CP112872.1:1703680–1706259 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium pasteurianum] |
| adhEOSC52_15690 | UZW13276.1 | OG0001124 | CP112872.1:3286212–3288818 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium pasteurianum] |
| lctPOSC52_12715 | UZW12715.1 | OG0001228 | CP112872.1:2679703–2681226 - | L-lactate permease [Clostridium pasteurianum] |
| crtOSC52_15525 | UZW13247.1 | OG0001394 | CP112872.1:3247467–3248255 - | short-chain-enoyl-CoA hydratase [Clostridium pasteurianum] |
| crtOSC52_05850 | UZW15361.1 | OG0001639 | CP112872.1:1246104–1246880 + | enoyl-CoA hydratase-related protein [Clostridium pasteurianum] |
| adhEOSC52_08325 | UZW15812.1 | OG0014809 | CP112872.1:1755825–1758407 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium pasteurianum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.