Assembly
ASM2665090v1
BioProject PRJNA735695 · BioSample SAMN22045398
GENOME-RESOLVED EVIDENCE
GCA_026650905.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5510965 bp · GC 31.000%
Completeness 99.690% · contamination 1.880%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL065_00815 | WAG41319.1 | OG0000061 | CP086140.1:140561–141907 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCLL065_12130 | WAG39073.1 | OG0000061 | CP086140.1:2534216–2535562 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLL065_05845 | WAG42216.1 | OG0000131 | CP086140.1:1241683–1242630 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBLL065_00805 | WAG41317.1 | OG0000212 | CP086140.1:139464–139973 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBLL065_12125 | WAG39072.1 | OG0000212 | CP086140.1:2533638–2534147 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLL065_22585 | WAG40995.1 | OG0000229 | CP086140.1:4795312–4796160 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLL065_21125 | WAG40725.1 | OG0000234 | CP086140.1:4461765–4462946 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLL065_00810 | WAG41318.1 | OG0000785 | CP086140.1:140042–140509 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhELL065_15890 | WAG39751.1 | OG0001124 | CP086140.1:3350708–3353329 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPLL065_17260 | WAG40003.1 | OG0001228 | CP086140.1:3657180–3658703 - | L-lactate permease [Clostridium estertheticum] |
| crtLL065_22605 | WAG40999.1 | OG0001394 | CP086140.1:4799329–4800108 - | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.