Assembly
ASM2665092v1
BioProject PRJNA735695 · BioSample SAMN22045401
GENOME-RESOLVED EVIDENCE
GCA_026650925.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4931916 bp · GC 31.000%
Completeness 99.070% · contamination 2.800%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL127_06120 | WAG47049.1 | OG0000061 | CP086147.1:1274215–1275561 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLL127_02570 | WAG46456.1 | OG0000131 | CP086147.1:539836–540783 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhLL127_11055 | WAG44126.1 | OG0000131 | CP086147.1:2334896–2335843 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBLL127_06110 | WAG47047.1 | OG0000212 | CP086147.1:1273130–1273639 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLL127_04160 | WAG46752.1 | OG0000229 | CP086147.1:876441–877289 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLL127_03455 | WAG46621.1 | OG0000234 | CP086147.1:721844–723025 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLL127_06115 | WAG47048.1 | OG0000785 | CP086147.1:1273708–1274163 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhELL127_19720 | WAG45716.1 | OG0001124 | CP086147.1:4167270–4169891 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPLL127_21060 | WAG45968.1 | OG0001228 | CP086147.1:4465191–4466714 - | L-lactate permease [Clostridium estertheticum] |
| crtLL127_04180 | WAG46756.1 | OG0001394 | CP086147.1:880459–881238 - | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtLL127_17960 | WAG45389.1 | OG0001639 | CP086147.1:3768076–3768852 - | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.