Assembly
ASM2665096v1
BioProject PRJNA735695 · BioSample SAMN22664610
GENOME-RESOLVED EVIDENCE
GCA_026650965.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5444666 bp · GC 31.000%
Completeness 99.380% · contamination 4.660%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL033_10540 | WAG57573.1 | OG0000061 | CP086237.1:2220225–2221571 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCLL033_22240 | WAG55292.1 | OG0000061 | CP086237.1:4650864–4652210 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLL033_06200 | WAG56830.1 | OG0000131 | CP086237.1:1332756–1333703 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhLL033_16355 | WAG54202.1 | OG0000131 | CP086237.1:3442867–3443814 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBLL033_10530 | WAG57571.1 | OG0000212 | CP086237.1:2219140–2219649 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBLL033_22235 | WAG55291.1 | OG0000212 | CP086237.1:4650301–4650795 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLL033_01910 | WAG57874.1 | OG0000229 | CP086237.1:408530–409375 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| hbdLL033_08400 | WAG57237.1 | OG0000229 | CP086237.1:1785358–1786206 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLL033_07160 | WAG57004.1 | OG0000234 | CP086237.1:1527196–1528377 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLL033_10535 | WAG57572.1 | OG0000785 | CP086237.1:2219718–2220173 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhELL033_01770 | WAG55992.1 | OG0001124 | CP086237.1:373489–376110 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPLL033_03280 | WAG56276.1 | OG0001228 | CP086237.1:712625–714148 - | L-lactate permease [Clostridium estertheticum] |
| crtLL033_08420 | WAG57241.1 | OG0001394 | CP086237.1:1789375–1790154 - | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtLL033_24000 | WAG55607.1 | OG0001639 | CP086237.1:5042782–5043558 - | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.