Assembly
ASM2665098v1
BioProject PRJNA735695 · BioSample SAMN22664609
GENOME-RESOLVED EVIDENCE
GCA_026650985.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5350827 bp · GC 31.000%
Completeness 99.070% · contamination 1.450%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL038_19905 | WAG59804.1 | OG0000061 | CP086239.1:4135289–4136635 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLL038_15360 | WAG59016.1 | OG0000131 | CP086239.1:3190551–3191498 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhLL038_25195 | WAG63299.1 | OG0000131 | CP086241.1:1262–2209 - | L-lactate dehydrogenase (plasmid) [Clostridium estertheticum] |
| accBLL038_19895 | WAG59802.1 | OG0000212 | CP086239.1:4134203–4134712 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLL038_17715 | WAG59459.1 | OG0000229 | CP086239.1:3683721–3684569 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLL038_16410 | WAG59214.1 | OG0000234 | CP086239.1:3405241–3406422 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLL038_19900 | WAG59803.1 | OG0000785 | CP086239.1:4134782–4135237 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| lctPLL038_12435 | WAG62988.1 | OG0001228 | CP086239.1:2587778–2589301 - | L-lactate permease [Clostridium estertheticum] |
| crtLL038_17735 | WAG59463.1 | OG0001394 | CP086239.1:3687737–3688516 - | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtLL038_00705 | WAG60805.1 | OG0008680 | CP086239.1:170475–171305 + | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.