Assembly
ASM2665100v1
BioProject PRJNA735695 · BioSample SAMN22664608
GENOME-RESOLVED EVIDENCE
GCA_026651005.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5443277 bp · GC 31.000%
Completeness 99.070% · contamination 0.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL037_02590 | WAG66125.1 | OG0000061 | CP086243.1:548226–549572 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLL037_07320 | WAG66933.1 | OG0000131 | CP086243.1:1513220–1514167 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhLL037_22615 | WAG65208.1 | OG0000131 | CP086243.1:4763422–4764369 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBLL037_02600 | WAG66127.1 | OG0000212 | CP086243.1:550149–550658 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLL037_04770 | WAG66464.1 | OG0000229 | CP086243.1:991912–992760 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| hbdLL037_11635 | WAG67744.1 | OG0000229 | CP086243.1:2434124–2434969 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLL037_06270 | WAG66732.1 | OG0000234 | CP086243.1:1297686–1298867 + | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLL037_02595 | WAG66126.1 | OG0000785 | CP086243.1:549624–550079 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| lctPLL037_10250 | WAG67489.1 | OG0001228 | CP086243.1:2131261–2132784 + | L-lactate permease [Clostridium estertheticum] |
| crtLL037_04750 | WAG66460.1 | OG0001394 | CP086243.1:987965–988744 + | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.