Assembly
ASM2665102v1
BioProject PRJNA735695 · BioSample SAMN22664607
GENOME-RESOLVED EVIDENCE
GCA_026651025.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4063009 bp · GC 31.500%
Completeness 98.450% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL036_13290 | WAG68996.1 | OG0000061 | CP086246.1:2878551–2879894 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CF011] |
| ldhLL036_18030 | WAG69834.1 | OG0000131 | CP086246.1:3849142–3850089 + | L-lactate dehydrogenase [Clostridium sp. CF011] |
| accBLL036_13280 | WAG68994.1 | OG0000212 | CP086246.1:2877466–2877984 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CF011] |
| hbdLL036_10780 | WAG68588.1 | OG0000229 | CP086246.1:2331585–2332433 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CF011] |
| thlLL036_10225 | WAG68482.1 | OG0000234 | CP086246.1:2212876–2214054 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CF011] |
| fabZLL036_13285 | WAG68995.1 | OG0000785 | CP086246.1:2878054–2878500 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CF011] |
| lctPLL036_08530 | WAG71432.1 | OG0001228 | CP086246.1:1851648–1853171 - | L-lactate permease [Clostridium sp. CF011] |
| crtLL036_10800 | WAG68592.1 | OG0001394 | CP086246.1:2335599–2336378 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CF011] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.