Assembly
ASM2665104v1
BioProject PRJNA735695 · BioSample SAMN22664606
GENOME-RESOLVED EVIDENCE
GCA_026651045.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5088069 bp · GC 31.000%
Completeness 99.070% · contamination 2.300%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLL032_08880 | WAG75478.1 | OG0000061 | CP086249.1:1836913–1838259 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCLL032_19480 | WAG73297.1 | OG0000061 | CP086249.1:4054795–4056141 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLL032_04835 | WAG74787.1 | OG0000131 | CP086249.1:1043376–1044323 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhLL032_13660 | WAG72220.1 | OG0000131 | CP086249.1:2873219–2874166 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBLL032_08870 | WAG75476.1 | OG0000212 | CP086249.1:1835828–1836337 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBLL032_19475 | WAG73296.1 | OG0000212 | CP086249.1:4054217–4054726 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLL032_06485 | WAG75093.1 | OG0000229 | CP086249.1:1385947–1386795 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLL032_05695 | WAG74947.1 | OG0000234 | CP086249.1:1220782–1221963 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| thlLL032_15700 | WAG72584.1 | OG0000234 | CP086249.1:3296659–3297834 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLL032_08875 | WAG75477.1 | OG0000785 | CP086249.1:1836406–1836861 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhELL032_00730 | WAG74017.1 | OG0001124 | CP086249.1:150818–153439 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPLL032_02170 | WAG74286.1 | OG0001228 | CP086249.1:468921–470444 - | L-lactate permease [Clostridium estertheticum] |
| crtLL032_06505 | WAG75097.1 | OG0001394 | CP086249.1:1389963–1390742 - | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtLL032_21360 | WAG73639.1 | OG0001639 | CP086249.1:4461379–4462155 - | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
| adhELL032_22170 | WAG73789.1 | OG0019615 | CP086249.1:4671708–4674296 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.