Assembly
ASM2759456v1
BioProject PRJNA735695 · BioSample SAMN14843675
GENOME-RESOLVED EVIDENCE
GCA_027594565.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4905639 bp · GC 31.000%
Completeness 99.070% · contamination 1.370%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLOR37_02395 | WBL47595.1 | OG0000061 | CP087098.1:509121–510467 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCLOR37_14010 | WBL45799.1 | OG0000061 | CP087098.1:2943574–2944920 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhLOR37_06570 | WBL48317.1 | OG0000131 | CP087098.1:1350535–1351482 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhLOR37_19215 | WBL46754.1 | OG0000131 | CP087098.1:4027161–4028108 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBLOR37_02405 | WBL47597.1 | OG0000212 | CP087098.1:511043–511552 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBLOR37_14015 | WBL45800.1 | OG0000212 | CP087098.1:2944989–2945498 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdLOR37_04710 | WBL47966.1 | OG0000229 | CP087098.1:971378–972226 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlLOR37_05650 | WBL48141.1 | OG0000234 | CP087098.1:1163542–1164723 + | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZLOR37_02400 | WBL47596.1 | OG0000785 | CP087098.1:510519–510974 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhELOR37_10510 | WBL49059.1 | OG0001124 | CP087098.1:2181043–2183664 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPLOR37_09240 | WBL48821.1 | OG0001228 | CP087098.1:1900495–1902018 + | L-lactate permease [Clostridium estertheticum] |
| crtLOR37_04690 | WBL47962.1 | OG0001394 | CP087098.1:967431–968210 + | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtLOR37_12495 | WBL45516.1 | OG0001639 | CP087098.1:2614512–2615288 + | enoyl-CoA hydratase-related protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.