Assembly
ASM2762749v1
BioProject PRJNA913558 · BioSample SAMN32300840
GENOME-RESOLVED EVIDENCE
GCA_027627495.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4625068 bp · GC 28.500%
Completeness 96.160% · contamination 2.400%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCO4N14_04535 | WBP99880.1 | OG0000061 | CP114763.1:963864–965210 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCO4N14_13190 | WBP98217.1 | OG0000061 | CP114763.1:2737244–2738596 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhO4N14_10695 | WBP97740.1 | OG0000131 | CP114763.1:2180983–2181936 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhO4N14_13550 | WBP98288.1 | OG0000131 | CP114763.1:2816923–2817876 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhO4N14_14765 | WBP98522.1 | OG0000131 | CP114763.1:3112524–3113462 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhO4N14_19650 | WBQ00872.1 | OG0000131 | CP114764.1:391016–391960 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBO4N14_04530 | WBP99879.1 | OG0000212 | CP114763.1:963360–963821 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| accBO4N14_13200 | WBP98219.1 | OG0000212 | CP114763.1:2739037–2739543 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdO4N14_01755 | WBP99387.1 | OG0000229 | CP114763.1:371292–372140 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlO4N14_02345 | WBP99474.1 | OG0000234 | CP114763.1:481425–482606 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZO4N14_13195 | WBP98218.1 | OG0000785 | CP114763.1:2738605–2739033 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEO4N14_17210 | WBP98969.1 | OG0001124 | CP114763.1:3728069–3730699 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPO4N14_11200 | WBP97835.1 | OG0001228 | CP114763.1:2298081–2299622 - | L-lactate permease [Clostridium butyricum] |
| crtO4N14_01735 | WBP99383.1 | OG0001394 | CP114763.1:367291–368076 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.