Assembly
ASM2847298v1
BioProject PRJNA793367 · BioSample SAMN24532405
GENOME-RESOLVED EVIDENCE
GCA_028472985.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3320329 bp · GC 28.500%
Completeness 74.890% · contamination 3.140%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhLZD60_16415 | WCM70102.1 | OG0000131 | CP090377.1:3255105–3256058 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBLZD60_09720 | WCM71482.1 | OG0000212 | CP090377.1:1891251–1891505 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdLZD60_02530 | WCM70489.1 | OG0000229 | CP090377.1:482248–483096 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlLZD60_03340 | WCM70603.1 | OG0000234 | CP090377.1:617660–618838 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZLZD60_09715 | WCM69017.1 | OG0000785 | CP090377.1:1890829–1891248 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhELZD60_01155 | WCM70291.1 | OG0001124 | CP090377.1:222246–224843 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtLZD60_02510 | WCM70486.1 | OG0001394 | CP090377.1:478340–479122 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtLZD60_16455 | WCM70107.1 | OG0001639 | CP090377.1:3265935–3266711 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.