Assembly
ASM2860702v1
BioProject PRJNA930673 · BioSample SAMN33053616
GENOME-RESOLVED EVIDENCE
GCA_028607025.1
Limosilactobacillus portuensis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1990713 bp · GC 40.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_273646472.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 313.700 / 0.94900 | Bridge orthogroup OG0001120 |
| accBWP_003714183.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 125.800 / 0.99400 | Annotation: gene_symbol |
| accCWP_273646471.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 638.500 / 0.99300 | Annotation: gene_symbol |
| accDWP_124031311.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 365.400 / 0.92800 | Bridge orthogroup OG0000844 |
| adhEWP_273645879.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1072.900 / 0.99100 | Bridge orthogroup OG0002334 |
| fabFWP_273646469.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 517.800 / 0.98800 | Annotation: gene_symbol |
| fabGWP_273646468.1 · 3-oxoacyl-ACP reductase family protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 220.200 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_273646473.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 342.900 / 0.96900 | Annotation: gene_symbol |
| fabZWP_273646470.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 153.000 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_273646463.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 127.000 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_273646400.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 311.400 / 0.98900 | Bridge orthogroup OG0000153 |
| thlWP_102167985.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 516.900 / 0.99200 | Bridge orthogroup OG0000010 |
| fabGWP_003716686.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.500 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_273645735.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.000 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_148444536.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 169.800 / 0.99200 | Profile only |
| fabGWP_102169077.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.900 / 0.87900 | Bridge orthogroup OG0000242 |
| fabGWP_273646083.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 135.700 / 0.98800 | Profile only |
| fabHWP_273646465.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 263.500 / 0.99400 | Profile only |
| fabKWP_273645941.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 227.300 / 0.95900 | Profile only |
| fabLWP_003716686.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.300 / 0.97600 | Profile only |
| fabLWP_273646468.1 · 3-oxoacyl-ACP reductase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.500 / 0.97600 | Profile only |
| fabLWP_273645735.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.500 / 0.99200 | Profile only |
| fabLWP_148444536.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.300 / 0.99200 | Profile only |
| fabLWP_102169077.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 141.500 / 0.88900 | Profile only |
| fabLWP_273646083.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.400 / 0.97200 | Profile only |
| ldhWP_003716968.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 384.100 / 0.98100 | Profile only |
| ldhWP_273645716.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 359.900 / 0.98100 | Profile only |
| ldhWP_102169126.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 326.500 / 0.97200 | Profile only |
| ldhWP_273646023.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 259.500 / 0.96500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.