Assembly
ASM2886717v1
BioProject PRJNA935303 · BioSample SAMN33306092
GENOME-RESOLVED EVIDENCE
GCA_028867175.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3528159 bp · GC 28.500%
Completeness 98.120% · contamination 6.030%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPVA22_06650 | WDT40811.1 | OG0000061 | CP118265.1:1531859–1533211 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhPVA22_00705 | WDT39662.1 | OG0000131 | CP118265.1:157873–158826 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBPVA22_06640 | WDT40809.1 | OG0000212 | CP118265.1:1530934–1531425 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdPVA22_13405 | WDT39181.1 | OG0000229 | CP118265.1:2955741–2956589 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlPVA22_12690 | WDT39065.1 | OG0000234 | CP118265.1:2823885–2825063 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZPVA22_06645 | WDT40810.1 | OG0000785 | CP118265.1:1531428–1531847 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEPVA22_14705 | WDT39411.1 | OG0001124 | CP118265.1:3213794–3216391 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPPVA22_01790 | WDT39865.1 | OG0001228 | CP118265.1:412172–413695 + | L-lactate permease [Clostridium perfringens] |
| crtPVA22_13425 | WDT39185.1 | OG0001394 | CP118265.1:2959716–2960498 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtPVA22_00665 | WDT39654.1 | OG0001639 | CP118265.1:147218–147994 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.