Assembly
ASM2939291v1
BioProject PRJNA925142 · BioSample SAMN32781896
GENOME-RESOLVED EVIDENCE
GCA_029392915.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3524770 bp · GC 28.500%
Completeness 95.140% · contamination 3.560%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPL327_07845 | WEV23593.1 | OG0000061 | CP116428.1:1695356–1696708 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens D] |
| ldhPL327_00810 | WEV22244.1 | OG0000131 | CP116428.1:180796–181749 - | L-lactate dehydrogenase [Clostridium perfringens D] |
| accBPL327_07835 | WEV23592.1 | OG0000212 | CP116428.1:1694432–1694923 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens D] |
| hbdPL327_13935 | WEV21755.1 | OG0000229 | CP116428.1:3014403–3015251 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens D] |
| thlPL327_13325 | WEV21659.1 | OG0000234 | CP116428.1:2897457–2898635 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens D] |
| lctPPL327_01835 | WEV22433.1 | OG0001228 | CP116428.1:420489–422012 + | L-lactate permease [Clostridium perfringens D] |
| crtPL327_13955 | WEV21759.1 | OG0001394 | CP116428.1:3018378–3019160 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
| crtPL327_00770 | WEV22236.1 | OG0001639 | CP116428.1:170143–170919 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.