Assembly
ASM2939293v1
BioProject PRJNA925142 · BioSample SAMN32781893
GENOME-RESOLVED EVIDENCE
GCA_029392935.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3406484 bp · GC 28.500%
Completeness 89.030% · contamination 3.700%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPL326_07265 | WEV14468.1 | OG0000061 | CP116434.1:1615857–1617209 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens D] |
| ldhPL326_00775 | WEV13266.1 | OG0000131 | CP116434.1:164785–165738 - | L-lactate dehydrogenase [Clostridium perfringens D] |
| accBPL326_07255 | WEV14466.1 | OG0000212 | CP116434.1:1614932–1615423 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens D] |
| hbdPL326_13565 | WEV12833.1 | OG0000229 | CP116434.1:2959560–2960408 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens D] |
| thlPL326_12805 | WEV12717.1 | OG0000234 | CP116434.1:2823357–2824535 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens D] |
| fabZPL326_07260 | WEV14467.1 | OG0000785 | CP116434.1:1615426–1615845 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens D] |
| adhEPL326_14900 | WEV13048.1 | OG0001124 | CP116434.1:3217198–3219795 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens D] |
| lctPPL326_01945 | WEV13472.1 | OG0001228 | CP116434.1:421182–422705 + | L-lactate permease [Clostridium perfringens D] |
| crtPL326_13585 | WEV12836.1 | OG0001394 | CP116434.1:2963534–2964316 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
| crtPL326_00735 | WEV13260.1 | OG0001639 | CP116434.1:154135–154911 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.