Assembly
ASM2939295v1
BioProject PRJNA925142 · BioSample SAMN32781895
GENOME-RESOLVED EVIDENCE
GCA_029392955.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3547608 bp · GC 28.500%
Completeness 93.820% · contamination 3.900%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPL323_07515 | WEV20475.1 | OG0000061 | CP116430.1:1659923–1661275 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens D] |
| ldhPL323_00670 | WEV19171.1 | OG0000131 | CP116430.1:151133–152086 - | L-lactate dehydrogenase [Clostridium perfringens D] |
| accBPL323_07505 | WEV20473.1 | OG0000212 | CP116430.1:1658998–1659489 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens D] |
| hbdPL323_14070 | WEV18713.1 | OG0000229 | CP116430.1:3089108–3089956 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens D] |
| thlPL323_13320 | WEV18592.1 | OG0000234 | CP116430.1:2949676–2950854 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens D] |
| fabZPL323_07510 | WEV20474.1 | OG0000785 | CP116430.1:1659492–1659911 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens D] |
| adhEPL323_15375 | WEV18934.1 | OG0001124 | CP116430.1:3346596–3349193 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens D] |
| lctPPL323_01775 | WEV19373.1 | OG0001228 | CP116430.1:406287–407810 + | L-lactate permease [Clostridium perfringens D] |
| crtPL323_14090 | WEV18717.1 | OG0001394 | CP116430.1:3093083–3093865 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
| crtPL323_00630 | WEV19163.1 | OG0001639 | CP116430.1:140477–141253 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.