Assembly
ASM2939297v1
BioProject PRJNA925142 · BioSample SAMN32781894
GENOME-RESOLVED EVIDENCE
GCA_029392975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3439187 bp · GC 28.500%
Completeness 85.110% · contamination 3.110%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPL325_07175 | WEV17355.1 | OG0000061 | CP116432.1:1577233–1578585 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens D] |
| accBPL325_07165 | WEV17353.1 | OG0000212 | CP116432.1:1576308–1576799 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens D] |
| hbdPL325_13800 | WEV15700.1 | OG0000229 | CP116432.1:2955362–2956210 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens D] |
| thlPL325_13155 | WEV15603.1 | OG0000234 | CP116432.1:2833321–2834499 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens D] |
| fabZPL325_07170 | WEV17354.1 | OG0000785 | CP116432.1:1576802–1577221 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens D] |
| adhEPL325_15130 | WEV15925.1 | OG0001124 | CP116432.1:3218248–3220845 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens D] |
| crtPL325_13820 | WEV15704.1 | OG0001394 | CP116432.1:2959337–2960119 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
| crtPL325_00740 | WEV16187.1 | OG0001639 | CP116432.1:153997–154773 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens D] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.