Assembly
ASM2939307v1
BioProject PRJNA925142 · BioSample SAMN32781892
GENOME-RESOLVED EVIDENCE
GCA_029393075.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3494124 bp · GC 28.500%
Completeness 95.890% · contamination 4.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPL324_07265 | WEV09814.1 | OG0000061 | CP116436.1:1652501–1653853 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens B] |
| ldhPL324_00915 | WEV08609.1 | OG0000131 | CP116436.1:194079–195032 - | L-lactate dehydrogenase [Clostridium perfringens B] |
| accBPL324_07255 | WEV09812.1 | OG0000212 | CP116436.1:1651576–1652067 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens B] |
| hbdPL324_13670 | WEV08089.1 | OG0000229 | CP116436.1:3020278–3021126 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens B] |
| thlPL324_13060 | WEV07994.1 | OG0000234 | CP116436.1:2902913–2904091 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens B] |
| fabZPL324_07260 | WEV09813.1 | OG0000785 | CP116436.1:1652070–1652489 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens B] |
| adhEPL324_15040 | WEV08330.1 | OG0001124 | CP116436.1:3294019–3296616 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens B] |
| lctPPL324_01945 | WEV08797.1 | OG0001228 | CP116436.1:437597–439120 + | L-lactate permease [Clostridium perfringens B] |
| crtPL324_13690 | WEV08093.1 | OG0001394 | CP116436.1:3024253–3025035 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens B] |
| crtPL324_00640 | WEV08555.1 | OG0001639 | CP116436.1:140592–141368 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens B] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.