Assembly
ASM2939323v1
BioProject PRJNA925142 · BioSample SAMN32781891
GENOME-RESOLVED EVIDENCE
GCA_029393235.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3472761 bp · GC 28.500%
Completeness 94.280% · contamination 4.330%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPL322_06990 | WEV06723.1 | OG0000061 | CP116438.1:1575323–1576675 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens B] |
| ldhPL322_00745 | WEV05540.1 | OG0000131 | CP116438.1:163588–164541 - | L-lactate dehydrogenase [Clostridium perfringens B] |
| accBPL322_06980 | WEV06721.1 | OG0000212 | CP116438.1:1574398–1574889 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens B] |
| thlPL322_13125 | WEV04931.1 | OG0000234 | CP116438.1:2863932–2865110 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens B] |
| fabZPL322_06985 | WEV06722.1 | OG0000785 | CP116438.1:1574892–1575311 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens B] |
| adhEPL322_15315 | WEV05298.1 | OG0001124 | CP116438.1:3272389–3274986 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens B] |
| lctPPL322_01770 | WEV05725.1 | OG0001228 | CP116438.1:405221–406744 + | L-lactate permease [Clostridium perfringens B] |
| crtPL322_14030 | WEV05082.1 | OG0001394 | CP116438.1:3018637–3019419 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens B] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.