Assembly
ASM2954158v1
BioProject PRJNA473419 · BioSample SAMN33819949
GENOME-RESOLVED EVIDENCE
GCA_029541585.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3057045 bp · GC 28.000%
Completeness 95.470% · contamination 1.180%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP6X90_05705 | WFB45885.1 | OG0000061 | CP120689.1:1308350–1309702 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhP6X90_00615 | WFB44940.1 | OG0000131 | CP120689.1:135696–136649 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBP6X90_05695 | WFB45883.1 | OG0000212 | CP120689.1:1307425–1307916 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdP6X90_12175 | WFB44483.1 | OG0000229 | CP120689.1:2641523–2642371 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlP6X90_11605 | WFB44395.1 | OG0000234 | CP120689.1:2530191–2531369 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZP6X90_05700 | WFB45884.1 | OG0000785 | CP120689.1:1307919–1308338 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEP6X90_13490 | WFB44719.1 | OG0001124 | CP120689.1:2904598–2907195 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPP6X90_01660 | WFB45126.1 | OG0001228 | CP120689.1:371082–372605 + | L-lactate permease [Clostridium perfringens] |
| crtP6X90_12195 | WFB44487.1 | OG0001394 | CP120689.1:2645498–2646280 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.