Assembly
ASM2958067v1
BioProject PRJNA473419 · BioSample SAMN33820436
GENOME-RESOLVED EVIDENCE
GCA_029580675.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3056597 bp · GC 28.000%
Completeness 95.440% · contamination 1.180%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP6978_05705 | WFD77454.1 | OG0000061 | CP120745.1:1308350–1309702 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhP6978_00615 | WFD76509.1 | OG0000131 | CP120745.1:135696–136649 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBP6978_05695 | WFD77452.1 | OG0000212 | CP120745.1:1307425–1307916 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdP6978_12175 | WFD76051.1 | OG0000229 | CP120745.1:2641075–2641923 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlP6978_11605 | WFD75963.1 | OG0000234 | CP120745.1:2529743–2530921 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZP6978_05700 | WFD77453.1 | OG0000785 | CP120745.1:1307919–1308338 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEP6978_13490 | WFD76287.1 | OG0001124 | CP120745.1:2904150–2906747 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPP6978_01660 | WFD76695.1 | OG0001228 | CP120745.1:371082–372605 + | L-lactate permease [Clostridium perfringens] |
| crtP6978_12195 | WFD76055.1 | OG0001394 | CP120745.1:2645050–2645832 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.