Assembly
ASM2958077v1
BioProject PRJNA473419 · BioSample SAMN33824413
GENOME-RESOLVED EVIDENCE
GCA_029580775.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3027822 bp · GC 28.000%
Completeness 95.470% · contamination 1.180%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP7C31_05765 | WFD86010.1 | OG0000061 | CP120747.1:1308670–1310022 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhP7C31_00615 | WFD85054.1 | OG0000131 | CP120747.1:135696–136649 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBP7C31_05755 | WFD86008.1 | OG0000212 | CP120747.1:1307745–1308236 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdP7C31_12060 | WFD84598.1 | OG0000229 | CP120747.1:2612300–2613148 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlP7C31_11490 | WFD84511.1 | OG0000234 | CP120747.1:2500968–2502146 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZP7C31_05760 | WFD86009.1 | OG0000785 | CP120747.1:1308239–1308658 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEP7C31_13375 | WFD84833.1 | OG0001124 | CP120747.1:2875375–2877972 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPP7C31_01680 | WFD85244.1 | OG0001228 | CP120747.1:371082–372605 + | L-lactate permease [Clostridium perfringens] |
| crtP7C31_12080 | WFD84602.1 | OG0001394 | CP120747.1:2616275–2617057 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.