Assembly
ASM2958079v1
BioProject PRJNA473419 · BioSample SAMN33826306
GENOME-RESOLVED EVIDENCE
GCA_029580795.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3331782 bp · GC 28.500%
Completeness 96.460% · contamination 4.130%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP7C84_06715 | WFD88979.1 | OG0000061 | CP120749.1:1515591–1516943 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhP7C84_00675 | WFD87818.1 | OG0000131 | CP120749.1:152183–153136 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBP7C84_06705 | WFD88977.1 | OG0000212 | CP120749.1:1514666–1515157 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdP7C84_12895 | WFD87345.1 | OG0000229 | CP120749.1:2878790–2879638 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlP7C84_12290 | WFD87251.1 | OG0000234 | CP120749.1:2763294–2764472 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZP7C84_06710 | WFD88978.1 | OG0000785 | CP120749.1:1515160–1515579 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEP7C84_14270 | WFD87590.1 | OG0001124 | CP120749.1:3154338–3156935 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPP7C84_01780 | WFD88024.1 | OG0001228 | CP120749.1:405474–406997 + | L-lactate permease [Clostridium perfringens] |
| crtP7C84_12915 | WFD87349.1 | OG0001394 | CP120749.1:2882765–2883547 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtP7C84_00635 | WFD87810.1 | OG0001639 | CP120749.1:141536–142312 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.