Assembly
ASM2958081v1
BioProject PRJNA473419 · BioSample SAMN33826312
GENOME-RESOLVED EVIDENCE
GCA_029580815.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3339546 bp · GC 28.500%
Completeness 97.170% · contamination 2.750%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP7C80_06530 | WFD91874.1 | OG0000061 | CP120751.1:1490890–1492242 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhP7C80_00670 | WFD90750.1 | OG0000131 | CP120751.1:151474–152427 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBP7C80_06520 | WFD91872.1 | OG0000212 | CP120751.1:1489965–1490456 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdP7C80_13060 | WFD90278.1 | OG0000229 | CP120751.1:2902680–2903528 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlP7C80_12460 | WFD90184.1 | OG0000234 | CP120751.1:2787414–2788592 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZP7C80_06525 | WFD91873.1 | OG0000785 | CP120751.1:1490459–1490878 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEP7C80_14360 | WFD90508.1 | OG0001124 | CP120751.1:3160372–3162969 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPP7C80_01735 | WFD90949.1 | OG0001228 | CP120751.1:396424–397947 + | L-lactate permease [Clostridium perfringens] |
| crtP7C80_13080 | WFD90282.1 | OG0001394 | CP120751.1:2906655–2907437 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtP7C80_00630 | WFD90742.1 | OG0001639 | CP120751.1:140828–141604 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.