Assembly
ASM2958115v1
BioProject PRJNA473419 · BioSample SAMN33826337
GENOME-RESOLVED EVIDENCE
GCA_029581155.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3325185 bp · GC 28.500%
Completeness 98.260% · contamination 3.230%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCP7C83_06400 | WFE18918.1 | OG0000061 | CP120753.1:1487269–1488621 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhP7C83_00670 | WFE17810.1 | OG0000131 | CP120753.1:151498–152451 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBP7C83_06390 | WFE18916.1 | OG0000212 | CP120753.1:1486344–1486835 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdP7C83_12620 | WFE17350.1 | OG0000229 | CP120753.1:2827660–2828508 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlP7C83_12015 | WFE17256.1 | OG0000234 | CP120753.1:2710261–2711439 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZP7C83_06395 | WFE18917.1 | OG0000785 | CP120753.1:1486838–1487257 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEP7C83_13920 | WFE17581.1 | OG0001124 | CP120753.1:3084973–3087570 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPP7C83_01680 | WFE17998.1 | OG0001228 | CP120753.1:386856–388379 + | L-lactate permease [Clostridium perfringens] |
| crtP7C83_12640 | WFE17354.1 | OG0001394 | CP120753.1:2831635–2832417 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtP7C83_00630 | WFE17802.1 | OG0001639 | CP120753.1:140844–141620 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.