Assembly
ASM2963622v1
BioProject PRJNA916607 · BioSample SAMN32487548
GENOME-RESOLVED EVIDENCE
GCA_029636225.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2828367 bp · GC 28.500%
Completeness 98.760% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCPAA20_00450 | WFN61983.1 | OG0000061 | CP115448.1:82974–84314 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tetani] |
| ldhPAA20_10410 | WFN61334.1 | OG0000131 | CP115448.1:2122442–2123392 - | L-lactate dehydrogenase [Clostridium tetani] |
| accBPAA20_00460 | WFN61985.1 | OG0000212 | CP115448.1:84785–85243 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tetani] |
| accBPAA20_03270 | WFN62478.1 | OG0000212 | CP115448.1:675671–675997 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium tetani] |
| hbdPAA20_12410 | WFN61683.1 | OG0000229 | CP115448.1:2530062–2530910 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani] |
| thlPAA20_01565 | WFN62166.1 | OG0000234 | CP115448.1:300438–301613 + | acetyl-CoA C-acetyltransferase [Clostridium tetani] |
| fabZPAA20_00455 | WFN61984.1 | OG0000785 | CP115448.1:84322–84750 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium tetani] |
| adhEPAA20_07090 | WFN60709.1 | OG0001124 | CP115448.1:1454496–1457126 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium tetani] |
| lctPPAA20_04905 | WFN62790.1 | OG0001228 | CP115448.1:1035734–1037254 + | L-lactate permease [Clostridium tetani] |
| crtPAA20_12430 | WFN61687.1 | OG0001394 | CP115448.1:2533921–2534703 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
| crtPAA20_02395 | WFN62319.1 | OG0001639 | CP115448.1:482294–483070 - | short-chain-enoyl-CoA hydratase [Clostridium tetani] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.