Assembly
ASM3029691v1
BioProject PRJDB15636 · BioSample SAMD00592141
GENOME-RESOLVED EVIDENCE
GCA_030296915.1
Anaerostipes hadrus ATCC 29173 = JCM 17467 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2804089 bp · GC 37.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_009203700.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 149.300 / 0.98800 | Annotation: gene_symbol |
| accBWP_008392668.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 148.700 / 0.99400 | Annotation: gene_symbol |
| accCWP_008392669.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 685.300 / 0.98900 | Annotation: gene_symbol |
| coatWP_009202892.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 235.300 / 0.97700 | Annotation: specific_product_name |
| coatWP_008390819.1 · 3-oxoacid CoA-transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 94.500 / 0.67700 | Bridge orthogroup OG0000263 |
| crtWP_008392578.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 356.100 / 0.96100 | Bridge orthogroup OG0002531 |
| etfAWP_009204084.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 461.100 / 0.97900 | Bridge orthogroup OG0002903 |
| etfAWP_009203316.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 387.900 / 0.98500 | Bridge orthogroup OG0002903 |
| etfBWP_008394146.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 354.500 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_008391176.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 289.800 / 1.00000 | Bridge orthogroup OG0002348 |
| fabDWP_009203698.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 365.200 / 0.96800 | Annotation: gene_symbol |
| fabFWP_008393426.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 583.400 / 0.99500 | Annotation: gene_symbol |
| fabGWP_009203699.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 280.400 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_008393424.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 184.600 / 0.76500 | Bridge orthogroup OG0000074 |
| lctPWP_008394106.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 699.100 / 0.99200 | Bridge orthogroup OG0000731 |
| rnfAWP_008391304.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 278.800 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_009204286.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 300.500 / 0.95000 | Bridge orthogroup OG0001404 |
| rnfCWP_015530432.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 381.500 / 0.74400 | Bridge orthogroup OG0001114 |
| rnfDWP_008391309.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 341.000 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_009204287.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 288.200 / 0.95700 | Bridge orthogroup OG0001153 |
| rnfGWP_008391307.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 136.900 / 0.90700 | Bridge orthogroup OG0001292 |
| accCWP_009203701.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 709.500 / 0.99600 | Profile only |
| accCWP_009202818.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 509.500 / 0.98900 | Profile only |
| bcdWP_008392576.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 601.400 / 1.00000 | Profile only |
| bcdWP_009203271.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 548.300 / 1.00000 | Profile only |
| bcdWP_008394108.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 450.500 / 0.99500 | Profile only |
| crtWP_009265898.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.400 / 0.99600 | Annotation: specific_product_name |
| etfAWP_008392573.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 418.000 / 0.98500 | Profile only |
| etfAWP_008394110.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 374.400 / 0.99100 | Profile only |
| etfAWP_009202976.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 282.000 / 0.99400 | Profile only |
| etfBWP_008392574.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 321.400 / 1.00000 | Profile only |
| etfBWP_009203211.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 264.000 / 0.99600 | Profile only |
| fabGWP_008391704.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.100 / 0.96000 | Profile only |
| fabGWP_009204258.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 217.200 / 0.98800 | Profile only |
| fabGWP_009203713.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.300 / 0.97200 | Profile only |
| fabGWP_008392594.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.600 / 0.97600 | Profile only |
| fabGWP_008392547.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.400 / 0.97600 | Profile only |
| fabGWP_009202838.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 101.600 / 0.95600 | Bridge orthogroup OG0000242 |
| fabHWP_009202841.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 311.300 / 0.99100 | Profile only |
| fabLWP_009203699.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 229.300 / 0.97200 | Profile only |
| fabLWP_009204258.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.000 / 0.98000 | Profile only |
| fabLWP_008391704.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.100 / 0.95600 | Profile only |
| fabLWP_008392594.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 159.100 / 0.98800 | Profile only |
| fabLWP_008392547.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.500 / 0.98800 | Profile only |
| fabLWP_009203713.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 147.500 / 0.98400 | Profile only |
| hbdWP_008392577.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 418.400 / 0.98900 | Profile only |
| ldhWP_207642001.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 417.900 / 0.98400 | Profile only |
| ldhWP_009204521.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 321.900 / 0.98700 | Profile only |
| thlWP_009204510.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 609.400 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.