Assembly
ASM3038900v1
BioProject PRJNA987805 · BioSample SAMN35992232
GENOME-RESOLVED EVIDENCE
GCA_030389005.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4630814 bp · GC 28.500%
Completeness 96.160% · contamination 2.400%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQVH08_05505 | WJV35044.1 | OG0000061 | CP128832.1:1168656–1170002 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCQVH08_14160 | WJV33373.1 | OG0000061 | CP128832.1:2942008–2943360 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhQVH08_11670 | WJV32895.1 | OG0000131 | CP128832.1:2385764–2386717 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhQVH08_14520 | WJV33444.1 | OG0000131 | CP128832.1:3021687–3022640 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhQVH08_15735 | WJV33679.1 | OG0000131 | CP128832.1:3317288–3318226 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhQVH08_20965 | WJV36133.1 | OG0000131 | CP128833.1:711550–712494 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBQVH08_14170 | WJV33375.1 | OG0000212 | CP128832.1:2943801–2944307 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdQVH08_02725 | WJV34551.1 | OG0000229 | CP128832.1:576093–576941 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlQVH08_03315 | WJV34638.1 | OG0000234 | CP128832.1:686223–687404 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZQVH08_14165 | WJV33374.1 | OG0000785 | CP128832.1:2943369–2943797 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEQVH08_00315 | WJV34129.1 | OG0001124 | CP128832.1:71326–73956 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPQVH08_12170 | WJV32990.1 | OG0001228 | CP128832.1:2502847–2504388 - | L-lactate permease [Clostridium butyricum] |
| crtQVH08_02705 | WJV34547.1 | OG0001394 | CP128832.1:572092–572877 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.