Assembly
ASM3058544v1
BioProject PRJNA735695 · BioSample SAMN19799795
GENOME-RESOLVED EVIDENCE
GCA_030585445.1
Clostridium tagluense · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5507024 bp · GC 31.000%
Completeness 98.760% · contamination 1.750%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC93_23075 | WLC65636.1 | OG0000061 | CP077605.1:4932524–4933870 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium tagluense] |
| accBKTC93_23085 | WLC65638.1 | OG0000212 | CP077605.1:4934419–4934937 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium tagluense] |
| hbdKTC93_02225 | WLC66083.1 | OG0000229 | CP077605.1:475576–476424 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tagluense] |
| thlKTC93_03200 | WLC66251.1 | OG0000234 | CP077605.1:685333–686511 + | acetyl-CoA C-acetyltransferase [Clostridium tagluense] |
| fabZKTC93_23080 | WLC65637.1 | OG0000785 | CP077605.1:4933903–4934349 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium tagluense] |
| adhEKTC93_11385 | WLC67727.1 | OG0001124 | CP077605.1:2421733–2424315 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium tagluense] |
| crtKTC93_02205 | WLC66079.1 | OG0001394 | CP077605.1:471638–472417 + | short-chain-enoyl-CoA hydratase [Clostridium tagluense] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.