Assembly
ASM3058546v1
BioProject PRJNA735695 · BioSample SAMN19800468
GENOME-RESOLVED EVIDENCE
GCA_030585465.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4942908 bp · GC 31.000%
Completeness 99.690% · contamination 1.990%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC99_02350 | WLC75754.1 | OG0000061 | CP077615.1:504278–505624 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCKTC99_13905 | WLC73874.1 | OG0000061 | CP077615.1:2973026–2974372 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhKTC99_06155 | WLC76391.1 | OG0000131 | CP077615.1:1274352–1275299 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhKTC99_19620 | WLC74919.1 | OG0000131 | CP077615.1:4135848–4136795 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBKTC99_02360 | WLC75756.1 | OG0000212 | CP077615.1:506200–506709 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBKTC99_13910 | WLC73875.1 | OG0000212 | CP077615.1:2974441–2974950 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdKTC99_04335 | WLC76053.1 | OG0000229 | CP077615.1:899732–900580 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlKTC99_05255 | WLC76226.1 | OG0000234 | CP077615.1:1090097–1091278 + | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZKTC99_02355 | WLC75755.1 | OG0000785 | CP077615.1:505676–506131 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhEKTC99_10325 | WLC77149.1 | OG0001124 | CP077615.1:2179342–2181963 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPKTC99_08815 | WLC76877.1 | OG0001228 | CP077615.1:1841908–1843431 + | L-lactate permease [Clostridium estertheticum] |
| crtKTC99_04315 | WLC76049.1 | OG0001394 | CP077615.1:895785–896564 + | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtKTC99_12375 | WLC73591.1 | OG0001639 | CP077615.1:2633996–2634772 + | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.