Assembly
ASM3058548v1
BioProject PRJNA735695 · BioSample SAMN19800549
GENOME-RESOLVED EVIDENCE
GCA_030585485.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5109933 bp · GC 31.000%
Completeness 99.690% · contamination 1.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC98_05050 | WLC80673.1 | OG0000061 | CP077618.1:1070424–1071770 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCKTC98_16845 | WLC78844.1 | OG0000061 | CP077618.1:3584090–3585436 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhKTC98_08910 | WLC81313.1 | OG0000131 | CP077618.1:1863908–1864855 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhKTC98_21990 | WLC79777.1 | OG0000131 | CP077618.1:4658484–4659431 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBKTC98_05060 | WLC80675.1 | OG0000212 | CP077618.1:1072347–1072856 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBKTC98_16850 | WLC78845.1 | OG0000212 | CP077618.1:3585505–3586014 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdKTC98_07135 | WLC80991.1 | OG0000229 | CP077618.1:1496146–1496994 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlKTC98_07965 | WLC81141.1 | OG0000234 | CP077618.1:1669890–1671071 + | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZKTC98_05055 | WLC80674.1 | OG0000785 | CP077618.1:1071822–1072277 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhEKTC98_13110 | WLC78175.1 | OG0001124 | CP077618.1:2766064–2768685 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPKTC98_11665 | WLC77916.1 | OG0001228 | CP077618.1:2445661–2447184 + | L-lactate permease [Clostridium estertheticum] |
| crtKTC98_07115 | WLC80987.1 | OG0001394 | CP077618.1:1492199–1492978 + | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtKTC98_15190 | WLC78546.1 | OG0001639 | CP077618.1:3214387–3215163 + | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.