Assembly
ASM3058550v1
BioProject PRJNA735695 · BioSample SAMN19800121
GENOME-RESOLVED EVIDENCE
GCA_030585505.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5255814 bp · GC 31.000%
Completeness 99.690% · contamination 1.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC96_09690 | WLC72223.1 | OG0000061 | CP077610.1:2084151–2085497 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCKTC96_19980 | WLC70148.1 | OG0000061 | CP077610.1:4320078–4321424 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhKTC96_01650 | WLC70770.1 | OG0000131 | CP077610.1:335527–336474 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhKTC96_15255 | WLC69324.1 | OG0000131 | CP077610.1:3282943–3283890 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBKTC96_09695 | WLC72224.1 | OG0000212 | CP077610.1:2085566–2086075 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBKTC96_19990 | WLC70150.1 | OG0000212 | CP077610.1:4322012–4322521 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdKTC96_22080 | WLC70468.1 | OG0000229 | CP077610.1:4738237–4739085 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlKTC96_00765 | WLC70611.1 | OG0000234 | CP077610.1:151877–153058 + | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZKTC96_19985 | WLC70149.1 | OG0000785 | CP077610.1:4321476–4321943 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhEKTC96_05805 | WLC71529.1 | OG0001124 | CP077610.1:1237468–1240089 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPKTC96_04530 | WLC71299.1 | OG0001228 | CP077610.1:955944–957467 + | L-lactate permease [Clostridium estertheticum] |
| crtKTC96_22060 | WLC70464.1 | OG0001394 | CP077610.1:4734290–4735069 + | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.