Assembly
ASM3058552v1
BioProject PRJNA735695 · BioSample SAMN19800638
GENOME-RESOLVED EVIDENCE
GCA_030585525.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4661412 bp · GC 31.000%
Completeness 98.760% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC97_08900 | WLC85841.1 | OG0000061 | CP077624.1:1909422–1910768 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCKTC97_19515 | WLC84127.1 | OG0000061 | CP077624.1:4170386–4171732 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhKTC97_04075 | WLC84959.1 | OG0000131 | CP077624.1:903194–904141 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhKTC97_16065 | WLC83569.1 | OG0000131 | CP077624.1:3452504–3453451 + | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBKTC97_08895 | WLC85840.1 | OG0000212 | CP077624.1:1908844–1909353 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBKTC97_19505 | WLC84125.1 | OG0000212 | CP077624.1:4169280–4169810 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| hbdKTC97_17640 | WLC83855.1 | OG0000229 | CP077624.1:3787501–3788349 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlKTC97_16915 | WLC83718.1 | OG0000234 | CP077624.1:3626136–3627317 - | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZKTC97_19510 | WLC84126.1 | OG0000785 | CP077624.1:4169879–4170334 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhEKTC97_12200 | WLC82882.1 | OG0001124 | CP077624.1:2635054–2637675 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPKTC97_13470 | WLC83108.1 | OG0001228 | CP077624.1:2920976–2922499 - | L-lactate permease [Clostridium estertheticum] |
| crtKTC97_17660 | WLC83859.1 | OG0001394 | CP077624.1:3791517–3792296 - | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.