Assembly
ASM3058554v1
BioProject PRJNA735695 · BioSample SAMN19800639
GENOME-RESOLVED EVIDENCE
GCA_030585545.1
Clostridium estertheticum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5104519 bp · GC 31.000%
Completeness 99.070% · contamination 1.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 4 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC95_06670 | WLC89873.1 | OG0000061 | CP077628.1:1462433–1463779 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| accCKTC95_16845 | WLC87754.1 | OG0000061 | CP077628.1:3685392–3686738 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium estertheticum] |
| ldhKTC95_11845 | WLC86885.1 | OG0000131 | CP077628.1:2598052–2598999 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| ldhKTC95_21015 | WLC88450.1 | OG0000131 | CP077628.1:4496417–4497364 - | L-lactate dehydrogenase [Clostridium estertheticum] |
| accBKTC95_06675 | WLC89874.1 | OG0000212 | CP077628.1:1463848–1464357 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| accBKTC95_16855 | WLC87756.1 | OG0000212 | CP077628.1:3687314–3687823 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium estertheticum] |
| fabHKTC95_01955 | WLC90671.1 | OG0000222 | CP077628.1:430476–431594 + | 3-oxoacyl-ACP synthase III family protein [Clostridium estertheticum] |
| hbdKTC95_18855 | WLC88054.1 | OG0000229 | CP077628.1:4083774–4084622 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium estertheticum] |
| thlKTC95_20085 | WLC88283.1 | OG0000234 | CP077628.1:4305907–4307088 + | acetyl-CoA C-acetyltransferase [Clostridium estertheticum] |
| fabZKTC95_16850 | WLC87755.1 | OG0000785 | CP077628.1:3686790–3687245 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium estertheticum] |
| adhEKTC95_02975 | WLC89207.1 | OG0001124 | CP077628.1:653241–655862 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium estertheticum] |
| lctPKTC95_01535 | WLC88950.1 | OG0001228 | CP077628.1:334028–335551 + | L-lactate permease [Clostridium estertheticum] |
| crtKTC95_18835 | WLC88050.1 | OG0001394 | CP077628.1:4079827–4080606 + | short-chain-enoyl-CoA hydratase [Clostridium estertheticum] |
| crtKTC95_05005 | WLC89571.1 | OG0001639 | CP077628.1:1095774–1096550 + | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
| crtKTC95_01950 | WLC89021.1 | OG0014900 | CP077628.1:429738–430445 + | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
| crtKTC95_01935 | WLC90670.1 | OG0014902 | CP077628.1:427862–428602 + | enoyl-CoA hydratase/isomerase family protein [Clostridium estertheticum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.