Assembly
ASM3058556v1
BioProject PRJNA735695 · BioSample SAMN19799017
GENOME-RESOLVED EVIDENCE
GCA_030585565.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3778256 bp · GC 31.500%
Completeness 98.450% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC94_11480 | WLC60760.1 | OG0000061 | CP077766.1:2477717–2479060 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM028] |
| ldhKTC94_15830 | WLC61516.1 | OG0000131 | CP077766.1:3384079–3385026 + | L-lactate dehydrogenase [Clostridium sp. CM028] |
| accBKTC94_11470 | WLC60758.1 | OG0000212 | CP077766.1:2476632–2477150 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM028] |
| hbdKTC94_09185 | WLC60384.1 | OG0000229 | CP077766.1:1979614–1980462 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM028] |
| thlKTC94_08650 | WLC60286.1 | OG0000234 | CP077766.1:1860706–1861884 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM028] |
| fabZKTC94_11475 | WLC60759.1 | OG0000785 | CP077766.1:2477220–2477666 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM028] |
| lctPKTC94_07005 | WLC62984.1 | OG0001228 | CP077766.1:1503507–1505030 - | L-lactate permease [Clostridium sp. CM028] |
| crtKTC94_09205 | WLC60388.1 | OG0001394 | CP077766.1:1983628–1984407 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM028] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.