Assembly
ASM3066471v1
BioProject PRJNA999702 · BioSample SAMN36746977
GENOME-RESOLVED EVIDENCE
GCA_030664715.1
Clostridium septicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3444779 bp · GC 28.000%
Completeness 99.380% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQ6375_09715 | WLF68263.1 | OG0000061 | CP131445.1:1979569–1980921 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium septicum] |
| ldhQ6375_08145 | WLF70935.1 | OG0000131 | CP131445.1:1637759–1638709 - | L-lactate dehydrogenase [Clostridium septicum] |
| ldhQ6375_15385 | WLF69322.1 | OG0000131 | CP131445.1:3268138–3269088 - | L-lactate dehydrogenase [Clostridium septicum] |
| accBQ6375_09725 | WLF68265.1 | OG0000212 | CP131445.1:1981356–1981850 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium septicum] |
| hbdQ6375_01910 | WLF69797.1 | OG0000229 | CP131445.1:387515–388363 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium septicum] |
| thlQ6375_02540 | WLF69894.1 | OG0000234 | CP131445.1:503023–504204 + | acetyl-CoA C-acetyltransferase [Clostridium septicum] |
| fabZQ6375_09720 | WLF68264.1 | OG0000785 | CP131445.1:1980931–1981353 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium septicum] |
| adhEQ6375_09690 | WLF68258.1 | OG0001124 | CP131445.1:1972817–1975441 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium septicum] |
| lctPQ6375_14410 | WLF69151.1 | OG0001228 | CP131445.1:3036527–3038047 - | L-lactate permease [Clostridium septicum] |
| crtQ6375_01890 | WLF69793.1 | OG0001394 | CP131445.1:383566–384348 + | short-chain-enoyl-CoA hydratase [Clostridium septicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.