Assembly
ASM3075827v1
BioProject PRJNA1003819 · BioSample SAMN36905461
GENOME-RESOLVED EVIDENCE
GCA_030758275.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4609089 bp · GC 28.500%
Completeness 95.940% · contamination 1.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCQ9978_05530 | WLS68964.1 | OG0000061 | CP132344.1:1167541–1168887 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCQ9978_06705 | WLS69190.1 | OG0000061 | CP132344.1:1444973–1446325 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhQ9978_06350 | WLS69120.1 | OG0000131 | CP132344.1:1367512–1368465 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhQ9978_09020 | WLS66421.1 | OG0000131 | CP132344.1:1967122–1968075 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhQ9978_14795 | WLS67537.1 | OG0000131 | CP132344.1:3194930–3195868 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhQ9978_18055 | WLS70157.1 | OG0000131 | CP132345.1:213492–214436 + | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBQ9978_06695 | WLS69188.1 | OG0000212 | CP132344.1:1444026–1444532 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdQ9978_02725 | WLS68463.1 | OG0000229 | CP132344.1:573985–574833 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlQ9978_03335 | WLS68553.1 | OG0000234 | CP132344.1:688606–689787 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZQ9978_06700 | WLS69189.1 | OG0000785 | CP132344.1:1444536–1444964 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEQ9978_00325 | WLS68041.1 | OG0001124 | CP132344.1:74190–76820 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPQ9978_08530 | WLS69542.1 | OG0001228 | CP132344.1:1850324–1851865 + | L-lactate permease [Clostridium butyricum] |
| crtQ9978_02705 | WLS68459.1 | OG0001394 | CP132344.1:569984–570769 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.